Yo dawg I heard you like wget so I put some wget in your wget

Unfortunately this is indeed too big 😅

In other components, I just store the fasta and gtf in the test data and build the index inside the unit test. Examples:

• star_align_reads
• bd_rhapsody_sequence_analysis

This way, we don't need to store a large indexed reference. Could you get this to work here as well?

This seems to be empty

This script is no longer needed, right?

If the fastq files are inside test.sh, perhaps store the expected output in test.sh as well? ☺️

yep makes sense haha